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Inform user when packages are found that don't exist in MRAN snapshot #170

@andrie

Description

@andrie

When calling checkpoint(), the code scans the project for packages required. These are then automatically installed. However, there is no warning or other message if it find packages that are not available on the MRAN snapshot.

For example, in the following example, none of ALL, Biobase or golubEsets are on MRAN (these are BioConductor packages):

> checkpoint("2015-01-01", project =  "~/R/win-library/3.1/Biobase")


Scanning for packages used in this project
  |===========================================================================================| 100%
- Discovered 4 packages
Unable to parse 1 files:
- Code/R/get@PKGNAME@.R
Installing packages used in this project 
 - InstallingALL- InstallingBiobase- InstallinggolubEsetscheckpoint process complete

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